species:   Pimic
pid:       PID1824
parent:    Pmic_miR-1
paralog:   
locus:     scaffold_12:478925-479041
matures:   ['GUUGAGCCUGAUACAGUAGCCU', 'GCUACCGUUGUCAGACUUAACGU']
srr:       SRP140505
genome:    /Users/jax/+Genomes/Fungal_genomes/Pimic.Pismi1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Wong-Bajracharya2022-kz.SRP140505.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Wong-Bajracharya2022-kz.SRP140505.cram scaffold_12:478925-479041

4 out of bounds
2 alignments
2 proper strand
2 stranded perfect matches

***********************                                                                       ********************** 
UGCUACCGUUGUCAGACUUAACGUGAAACGUGCAGGAAUGCAGGUGCGCUAGUAAUAUCAGGCUUCACUCUUGUAUCAUUCUCAGGCCGCCUCAGGUUGAGCCUGAUACAGUAGCCU
.(((((.((.(((((.((((((.(((..((.((..(((((((((.(.(..(((........))).).).))))))).....))..))))..))).)))))).))))))).)))))..
-----------------------------------------------------------------------------------------------GUUGAGCCUGAUACAGUAGCCU l=22 a=0 c
-GCUACCGUUGUCAGACUUAACGU--------------------------------------------------------------------------------------------- l=23 a=0 c*
--CUACCGUUGUCAGACUUAACG---------------------------------------------------------------------------------------------- l=21 a=2 ma
------------------------------------------------------------------------------------------------UUGAGCCUGAUACAGUAGCC- l=20 a=0 ma*

--CUACCGUUGUCAGACUUAACG---------------------------------------------------------------------------------------------- l=21 a=2 (ma)

mb-01011
ax-1011111
ku-01
ss-111111111110
fn-011
